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article

Rasmussen, Craig,Squyres, Jeffrey M, "A Cast for New MPI Fortran Bindings", Proceedings, 12th European PVM/MPI Users' Group meeting, vol. n/a, no. N/A, pp. n/a, September, 2005. September, 2005.

Siek, Jeremy,Lee, Lee-Quan,Lumsdaine, Andrew, "Language Requirements for Large-Scale Generic Libraries", GPCE'05: Proceedings of the Fourth International Conference on Generative Programming and component engineer, vol. n/a, no. N/A, pp. n/a, September, 2005. September, 2005.

Lim, Sang Boem,Carpenter, Bryan,Fox, Geoffrey,Lee Han-ku, "A Low-Level Communication Library for Java HPC", Proceedings of Sixth International Conference on Algorithms and Architectures for parallel processing, vol. 3719, no. N/A, pp. 429-434, October 2-5, 2005. October 2-5, 2005.

Hoefler, Torsten,Squyres, Jeffrey M.,Mehlan, Torsten,Mietke, Frank,Rehm, Wolfgang, "implementing a Hardware-Based Barrier in Open MPI", Proceedings of KiCC'05, Chemnitzer Informatik Berichte, vol. n/a, no. N/A, pp. n/a, November, 2005. November, 2005.

Kim, Donginn,Squyres, Jeffrey M.,Lumsdaine, Andrew, "Revamping the OSCAR database: A Flexible Approach to Cluster Configuration data management", 19th International Symposium on High Performance Computing Systems and Applications, vol. n/a, no. N/A, pp. 326-332, May, 2005. May, 2005.

Oh, Sangyoon,Bulut, Hasan,Uyar, Ahmet,Wu, Wenjun,Fox, Geoffrey, "Optimized Communication using the SOAP Infoset for Mobile Multimedia Colloboration appliances", Proceedings of the IEEE International Symposium on Collaborative Technologies and Systems, vol. n/a, no. N/A, pp. 32-39, May, 2005. May, 2005.

Geoffrey Fox, Galip Aydin, Hasan Bulut, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, Wenjun Wu, "Management of Real-Time Streaming Data Grid Services", Concurrency and Computation: Practice and Experience Special Issue from Grid and Cooperative Computing 4th International Confernece November 20 to December 3, 2005 -- Beijing China, . March 12, 2005.

Lim, Sang Boem,Carpenter, Bryan,Fox, Geoffrey,Lee Han-ku, "Collective Communication for the HP Java programming language", Concurrency and Computation: Practice and Experience, vol. 17, no. N/A, pp. 867-894, 8-Jul. June, 2005.

Siek, Jeremy,Lee, Lee-Quan,Lumsdaine, Andrew, "Essential Language Support for Generic Programming", PLDI'05: Proceedings of the ACM SIGPLAN 2005 conference on Programming language design and implementation, vol. n/a, no. N/A, pp. 73-84, June, 2005. June, 2005.

Choonhan Youn, Marlon Pierce, Geoffrey C. Fox, "Building Problem Solving Environments with Applications Web Service Toolkits", Special Issue of Future Generation Computer Systems Magazine, vol. Vol. 21, pp. pp. 856-867 DOI, . June 2005.

Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, Han-ku Lee, "Collective Communication for teh HP Java Programming Language", Concurrency and Computation: Practice and Experience, vol. Vol 17, no. No. 7-8, pp. pp. 867-894, . June 2005.

Geoffrey Fox, Shrideep Pallickara, Xi Rao, "Towards Enabling Peer-to-Peer Grids or Original", Concurrency and Computation: Practice & Experience, vol. Vol. 17, no. Issue 7-8, pp. Pp. 1109-1131, . June 2005.

Wenjun Wu, Hasan Bulut, Ahmet Uyar, Geoffrey Fox, "Adapting H.323 Terminals in a Service-Oriented CollaborationSystem", Special "Internet Media" issue of IEEE Internet Computing, vol. Vol. 9, no. Num 4, pp. pp 43-50, . July-August 2005.

Gregor, Douglas,Lumsdaine, Andrew,, "The Parallel BGL: A General Library for Distributed Graph Computations", Parallel Object-Oriented Scientific Computing (POOSC), vol. n/a, no. N/A, pp. n/a, n/a. July, 2005.

Huffman, J.,McMullen, Donald F.,Huffman, Kianosh, "Remote Monitoring and Access to Instruments and Data. The CIMA Crystallography Portal.", Proceedings of the 2006 Annual meeting of the American Crystallographic Association, vol. n/a, no. N/A, pp. n/a, July 22-27, 2005. July 22-27, 2005.

J. Dantzer, C. Moad, R. Heiland, S. Mooney, "MutDB Services: Interactive Structural Analysis of Mutation Data", Oxford Journals --- Nucleic Acids Research, vol. Volume 33, . July 2005.

Mehmet A. Nacar, Mehmet S. Aktas, Marlon Pierce, Zhenyu Lu, Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, David A. Yuen, "VLab: Collaborative Grid Services and Portals to Support Computational Material Science", Special Issue on Grid Portals based on SC05 GCE'05 Workshop, Concurrency and Computation: Practice and Experience, . December 30, 2005.

Mueller, Christopher,Dalkilic, Mehmet,Lumsdaine, Andrew, "High-Performance Direct Pairwise Comparison of Large Genomic Sequences", Proceedings of the Fourth IEEE International Workshop on High Performance, vol. n/a, no. N/A, pp. n/a, April, 2005. April, 2005.

Tony Hey, Geoffrey Fox, "Grids and Web Services for e-Science", Concurrency and Computation: Practice and Experience 17,, pp. pp 317-322, . April 2005.

Sibaprasad Bhattacharyya, Maren Pink, Mu-Hyun Baik, Jeffrey M. Zaleski Angewandte, "A Unique Approach to Metal-Induced Bergman Cyclization: Long Range Enediyne Activation by Ligand-to-Metal Charge Transfer", Chemie International Edition, vol. 44, pp. 592-595, . 2005.

Xuan Jiang, John C. Bollinger, Mu-Hyun Baik and Dongwhan Lee, "Ligand-assisted Spin Delocalization in Dicopper(I,II) Cores: Use of Bulky Amidnate Ligands to Access Novel Tetra- and Dicopper Clusters", Chemical Communications, . 2005.

Mu-Hyun Baik, Erich W. Baum, Matthew C. Burland and P. Andrew, "Diasteroselective Intermolecular Rhodium-Catalyzed [4+2+2] Carbocyclization Reactions: Computational and Experimental Evidence for the Intermediacy of a New Metallocycle Intermediate", Evans Journal of the American Chemical Society, . 2005.

Heron, R.A., and E. Lie, "On the use of Poison Pills and Defensive Payouts by Takeover Targets.", Journal of Business, . 2005.

Mejia, A.C., Durisen, R.H., Pickett, M.K., & Cai, K, "The Thermal Regulation of Gravitational Instabilities in Protoplanetary Disks II. Extended Simulations with Varied Cooling Rates", Astrophysical Journal, . 2005.

Tuncay, K., A. Sayyed-Ahmad, L. Jarymowycz and P. Ortoleva, "Mesoscopic theory of multi-phase structures and macromolecule-fluid interactions", Journal of Computational Chemistry, . 2005.

Durisen, R.H., Cai, K., Mejia, A.C., & Pickett, M.K, "A Possible Hybrid Scenario for Gas Giant Planet Formation in Rings", Icarus, . 2005.

Durisen, R.H, "Gravitational Instabilities in Disks: From Polytropes to Protoplanets", Reviews of Mexican Astronomy & Astrophysics, . 2005.

Pryor S., Barthelmie R. and Schoof J, "Inter-annual variability of wind indices over Europe.", Wind Energy, . 2005.

Sandy Lam, Sarah R. Horn, Sarah J. Radford, Elizabeth A. Housworth, Franklin W. Stahl and Gregory P. Copenhaver, "Crossover Interference on NOR bearing Chromosomes in Arabidopsis.", Genetics, . 2005.

Pryor S.C., Barthelmie R.J. and Kjellstrom E, "Analyses of the potential climate change impact on wind energy resources in northern Europe using output from a Regional Climate Model.", Climate Dynamics, . 2005.

Wenjun Wu, Geoffrey Fox, Hasan Bulut, Ahmet Uyar, Tao Huang, "Service Oriented Architecture for VoIP Conferencing", Journal of Communication Systems - Special Issue on Voice Over IP, . 2005.

R. Raje, M. Qiao, S. Mukhopadhyay, S. Peng, M. Palakal, & J. Mostafa, "Homogeneous Agent-Based Distributed Information Filtering.", Cluster Computing, . 2005.

M. Palakal, S. Mukhopadhyay, J. Mostafa, R. Raje, S. Mishra, and M. N'Cho, "An Intelligent Biological Information Management System", Bioinformatics, . 2005.

Taraszka, J. A.; Kurulugama, R.; Sowell, R.; Valentine, S. J.; Koeniger, S. L; Miller, D. F.; Kaufman, T. C.; Clemmer, D. E., "Mapping the Proteome of Drosophila melanogaster: Analysis of Embryos and Adult Heads by LC-IMS-MS Methods", Analytical Chemistry, . 2005.

Taraszka, J. A.; Gao, X.; Valentine, S. J.; Koeniger, S. L; Miller, D. F.; Kaufman, T. C.; Clemmer, D. E., "Proteome Profiling for Assessing Diversity: Analysis of Individual Heads of Drosophila melanogaster using LC-Ion Mobility-MS", Analytical Chemistry, . 2005.

Douglas Gregor, Jaakko Järvi, Mayuresh Kulkarni, Andrew Lumsdaine, David Musser, and Sibylle Schupp, "Generic Programming and High-Performance Libraries.", International Journal of Parallel Programming, . 2005.

Jeffrey M. Squyres., "Debugging in Parallel (in Parallel)", ClusterWorld Magazine, vol. 3, no. 1, pp. 34-37, January. 2005.

Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, "Building Messaging Substrates for Web and Grid Applications", Special Issue on Scientific Applications of Grid Computing Philosophical Transactions of the Royal Society; Mathematical, Physical and Engineering Sciences, vol. Vol 363, pp. pp 1757-1773, August 15. 2005.

Dennis Gannon, Geoffrey Fox, "Workflow in Grid Systems Meeting", Concurrency & Computation: Practice & Experience based on GGF10 Berlin Meeting, Editorial Special Issue of, . 2005.

Minjun Wang, Geoffrey Fox, Marlon Pierce, "Instantiations of Shared Event Model in Grid-based Collaboration", SCI, . 2005.

S. Gottlieb, C. Aubin, C. Bernard, C. DeTar, M. Di Pierro, A. El-Khadra, E.B. Gregory, U.M. Heller, J. Hetrick, A.S. Kronfeld, P.B. Mackenzie, D. Menscher, M. Nobes, M. Okamoto, M.B. Oktay, J. Osborn, J. Simone, R. Sugar, D. Toussaint and H.D. Trottier, "Semileptonic decays of $D$ mesons in three-flavor lattice QCD.", Phys. Rev. Lett., vol. 94, no. 011601, . 2005.

C. J. Horowitz, M.A. Perez-Garcia, D.K. Berry, and J. Piekarewicz, "Dynamical response of the nuclear "pasta" in neutron star crusts", Phys. Rev. C, vol. 72, . 2005.

Jagannathan Lakshmipathy et. al., "Dynamic triangle strips for iso-surfaces in volumes", International Journal of Image and Graphics, September. 2005.

Shrideep Pallickara, Geoffrey Fox, Harshawardhan Gadgil, "On the Secure Creation, Organization and Discovery of Topics in Distributed Publish/Subscribe Systems", International Journal of High Performance Computing and Networking (IJHPCN) Special Issue of extended versions of the 6 best papers at the ACM/IEEE GRID 2006 Workshop, . 2005.

Geoffrey Fox, "Editorial for Special Issue: ACM 2002 Java Grande-- ISCOPE Conference", Concurrency and Computation: Practice and Experience, vol. Vol. 17, no. No. 5-6, pp. pp. 419-422, . 2005.

Debasis, Dan,Mueller, Chris,Chen, Kun,Glazier, James A, "Solving the advection-diffusion equations in biological contexts using the cellular Potts model", n/a, vol. 72, no. N/A, pp. n/a, n/a. 2005.

Douglas, Gregor,J?rvi, Jaakko,Kulkarni, Mayuresh,Lumsdaine, Andrew,Musser, David,Schupp, Sibylle, "Generic Programming for High-Performance Libraries", Generic Programming for High-Performance Libraries, vol. 3, no. N/A, pp. n/a, june. 2005.

Evans, M.A., "The effects of institutional elements on knowledge and work: A Critical-Realistic-inspired analysis of context.", Fourth International Critical Management Studies Conference, vol. n/a, no. N/A, pp. n/a, July 4-6. 2005.

Evans, Michael A.,Leake, David,McMullen, Donald F.,Bogaerts, Steven, "Evans, Michael A.,Leake, David,McMullen, Donald F.,Bogaerts, Steven", Proceedings of the Fifth International and Interdisciplinary Conference on Modeling, vol. n/a, no. N/A, pp. n/a, july 5-8. 2005.

Fox, Geoffrey, "Editorial for Special Issue: ACM 2002 Java Grande-ISCOPE Conference", Concurrency and Computation: Practice and Experience, vol. 17, no. N/A, pp. 419-422, May 6. 2005.

Fox, Geoffrey, "Global Multimedia Collaboration System Tutorial", Proceedings of the IEEE International Symposium on Collaborative Technologies and systems, vol. n/a, no. N/A, pp. n/a, 13 nov. 2005.

Sayar, Ahmet,Sayar, Ahmet,Rundle, John,Oh, Sangyoon,Pierce, Marlon,Parker, Jay,Pallickara, Shrideep,Granat, Robert,Fox, Geoffrey,Aktas, Mehmet,Aydin, Galip,Donnellan, Andrea,Gadgil, Harshawardhan,, "Building Sensor Filter Grids: Information Architecture for the Data Deluge", IEEE Proceedings of First International Conference on SKG2005 Semantics, knowledge and grid, vol. n/a, no. N/A, pp. n/a, November 27-29, 2005. 2005.

Fox, Geoffrey,Zhuge, Hai, "GCC2005 Special Issue on Autonomous Grip Computing", Fourth International Conference on Grid and Cooperative Computing, vol. n/a, no. N/A, pp. n/a, November 30-December 3, 2005. 2005.

Garcia, Ronald,Lumsdaine, Andrew, "MultiArray: A C++ library for generic programming with arrays", n/a, vol. 35, no. 2, pp. 159-188, n/a. 2005.

Garcia, Ronald,Lumsdaine, Andrew, "Type Classes Without Types", 2005 Workshop on Scheme and Functional Programming, vol. n/a, no. N/A, pp. n/a, sept. 2005.

Graham, Richard L,Woodall, Timothy S.,Squyres, Jeffrey M., "n/a", Proceedings, 6th Annual International Conference on Parallel Processing and Applied Mathematics, vol. n/a, no. N/A, pp. n/a, september. 2005.

Gregor, Douglas,Lumsdaine, Andrew, "The Execution Instance Overloading Pattern", Workshop on Patterns in High-Performance Computing, vol. n/a, no. N/A, pp. n/a, May. 2005.

,Leake, D.Bogaerts, S,,Evans, M., McMullen, D, "Contextual Support for Remote Cooperative Troubleshooting: Lessons from a Naturalistic Study.", Proceedings of the International Workshop on Cooperative Systems and Context. CEUR, vol. n/a, no. N/A, pp. n/a, n/a. 2005.

Mueller, Christopher,Mueller, Christopher,Lumsdaine, Andrew, "Implementing Data Parallel Algorithms for Bioinformatics", SIAM Conference on Computational Science and Engineering, vol. n/a, no. N/A, pp. n/a, 14-Feb-05. 2005.

Veldhuizen, Todd L., "Software Libraries and Their Reuse: Entropy, Kolmogorov Complexity, and Zipf's Law", n/a, vol. n/a, no. n/a, pp. n/a, n/a. 2005.

Evans, Michael,Leake, David,McMullen, Donald,Bogaerts, Steven, "Context in Remote Distributed Troubleshooting: Perspective on Socio-Technical Study", Fifth International and Interdisciplinary Conference on Modeling and Using Context, vol. n/a, no. n/a, pp. n/a, July 5-8. 2005.

Foster, I.,Gannon, Dennis,Kishimoto, H.,vonReich, J., "Open Grid Service Architecture Use Cases", Global Grid Forum Document #29, vol. n/a, no. n/a, pp. n/a, n/a. 2005.

Gannon, Dennis;Fox, Geoffrey, "Workflow in Grid Systems - Editorial", Concurrency & Computation: Practice & Experience, vol. n/a, no. n/a, pp. n/a, n/a. 2005.

Garcia, Ronald;J?rvi, Jaakko;Lumsdaine, Andrew;Siek, Jeremy;Willcock, Jeremiah, "An Extended Comparative Study of Language Support for Generic Programming", Journal of Functional Programming, vol. n/a, no. n/a, pp. n/a, n/a. 2005.

Pallickara, Shrideep;Fox, Geoffrey;Rao, Xi;Uyar, Ahmet;Walker, David, "Performance of a Possible Grid Messaging Infrastructure from UK e-Science Meeting on Grid performance", Concurrency and Computation: Practice and Experience - Special Issue on Grid Performance, vol. 17, no. 2-4, pp. 193-214, February. 2005.

Plale, Beth;Gannon, Dennis;Alameda, Jay;Droegemeier, KelvinWilhelmson, Bob;Hampton, Shawn;Rossi, Al, "Active Management of Scientific Data", IEEE Internet Computing Special Issue on Internet Access to Scientific Data, vol. 9, no. 1, pp. 27-34, January-February. 2005.

Sankaran, Sriram;Squyres, Jeffrey;Barrett, Hargrove, Paul;Roman, Eric;Brian;Lumsdaine, Andrew;Duell, Jason;, "LAM-MPI Checkpoint/Restart Framework: System-Initiated Checkpointing", International Journal of High Performance Computing Applications, vol. 19, no. 4, pp. 479-493, december. 2005.

book

McRobbie, M.A., and C.A. Stewart. , Indiana University, 2005.

conference

McMullen, D.F, "Instruments and Sensors on the Grid: The CIMA Middleware Project", . September 21, 2005.

Eric Wernert, Mike Boyles, John N. Huffman, Jeff Rogers, John C. Huffman, Craig Stewart, "The John-e-Box: Fostering Innovation, Inclusion, and Collaboration through Accessible Advanced Visualization", . October 19-22, 2005.

McMullen, D.F, "Network Attached Instruments: Overview of the Common Instrument Middleware Architecture and Application to X-Ray Diffraction Crystallography", . November 21, 2005.

R. Heiland, "Introduction to Distributed Computing", . November 2005.

McMullen, D.F, "Overview of the Common Instrument Middleware Architecture (CIMA)", . November 2, 2005.

Mehmet Nacar, Mehmet Aktas, Marlon Pierce, Zhenyu Lu, Gordon Erlebacher, Dan Kigelman, Evan F. Bollig, Cesar De Silva, Benny Sowell, David A. Yuen, "VLab: Collaborative Grid Services and Portals to Support Computational Material Science GCE'05 Workshop on Grid Portals", . November 18, 2005.

McMullen, D.F., Huffman, K., Gupta, N., Ma, Y, "Overview and Applications of the Common Instrument Middleware Architecture (CIMA)", . November 14-17, 2005.

Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, "HPSearch for Managing Distributed Services", . May 2005.

McMullen, D.F, "Instruments on the Grid", . March 3, 2005.

McMullen, D.F., Chiu, K, "CIMA: Scientific Instruments as First Class Members of the Grid", . March 28, 2005.

McMullen, D.F, "Overview of CIMA and the Instrument Middleware Project", . January 18, 2005.

Huffman, J, "X-Ray Crystallography, the quick tutorial", . January 18, 2005.

Huffman, K, "CIMA Crystallography Application", . January 18, 2005.

Chiu, K, "Web Services and CIMA", . January 18, 2005.

Ma, Y, "CIMA Data Management", . January 18, 2005.

Leah Sandvoss and Mu-Hyun Baik, "A combinatorial DFT study of how cisplatin binds to purine bases.", . 2005.

Ana Maguitman, Filippo Menczer, Heather Roinestad and Alessandro Vespignani, "Algorithmic Detection of Semantic Similarity.", . 2005.

Douglas Gregor and Andrew Lumsdaine, "Lifting Sequential Graph Algorithms for Distributed-Memory Parallel Computation.", . 2005.

Gang Zhai, Geoffrey Fox, Marlon Pierce, Wenjun Wu, Hasan Bulut, "eSports: Collaborative and Synchronous Video Annotation System in Grid Computing Environment, Irvine, California", , Dec 12-14. 2005.

Gang Zhai, Geoffrey Fox, Marlon Pierce, Wenjun Wu, Hasan Bulut, "eSports: Collaborative and Synchronous Video Annotation System in Grid Computing Environment", , Dec 12-14. 2005.

Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox, "Service-Oriented Architecture for a Scalable Videoconferencing System", . 2005.

Mehmet Aktas, Galip Aydin, Andrea Donnellan, Geoffrey Fox, Robert Granat, Greg Lyzenga, Dennis McLeod, Shrideep Pallickara, Jay Parker, Marlon Pierce, John Rundle, Ahmet Sayar, "Implementing Geographical Information System Grid Services to Support Computational Geophysics in a Service-Oriented Environment", . 2005.

Felipe Bertrand, Randall Bramley, Kostadin B. Damevski, James A. Kohl, David E. Bernholdt, Jay W. Larson, and Alan Sussman, "Data Redistribution and Remote Method Invocation in Parallel Component Architectures.", , 4-8 April. 2005.

Pete Burnap, HasanBulut, Shrideep Pallickara, Geoffrey Fox, David Walker, Ali Kaplan, Beytullah Yildiz, Mehmet A. Nacar, "Worldwide Messaging Support for High Performance Real-time Collaboration", , Sept. 2005.

Mehmet S. Aktas, Geoffrey Fox, Marlon Pierce, "Managing Dynamic Metadata as Context", Istanbul International Computational Science and Engineering Conference, N/A., June. 2005.

Crabtree, A., Evans, M.A., Fraser, M., Tolmie, P., McMullen, D.F., "Situating Ubiquitous Computing in Everyday Life: Bridging the Social and Technical Divide.", Workshop proposal submitted to the UbiComp 2005 International Conference, Tokyo, Japan., September 11-15. 2005.

Evans, M.A., "The Effects of Institutional Elements on Knowledge and Work: A Critical-Realist Inspired Anaysis of Context", 4th International Critical Management Studies Conference, Cambridge UK., July 4-6. 2005.

Leake, D., Bogaerts, S., Evans, M., McMullen, D.F., Oder, M., Valerio, A., "Using Cases to Support Divergent Roles in Distributed Collaboration", Eighteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS 2005), Menlo Park, CA., May 15-17,. 2005.

Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce, "Fault Tolerant High Performance Information Services for Dynamic Collections of Grid and Web Services", First International Conference on SKG2005 Semantics, Knowledge and Grid, Beijing, China., November 27-29. 2005.

Lakshmipathy, J. and E. A. Wernert, "PViN: A Scalable and Flexible System for Visualizing Pedigree Databases", I Light Symposium, IUPUI., September. 2005.

Rogers, J. L., and E. A. Wernert, "Developing and Deploying a Robust System for 3D Surface and Scanning Analysis", I-Light Symposium, IUPUI., September. 2005.

Harper, Allen,Balas, Edward, "Gen III Honeynets: The birth of Roo", Black Hat Security Conference, Las Vegas, NV., 27-Jul. 2005.

Bruhn, Mark,Ripley, David,Travis, Gregory, "War Gaming 2005: An Exercise in Ethical Cracking", EDUCAUSE Security Professionals Conference, Washington, DC., 3-Apr. 2005.

Bruhn, Mark,Ripley, David,Travis, Gregory, "War Gaming 2005: An Exercise in Ethical Cracking", EDUCAUSE Security Professionals Conference, Washington, DC., 3-Apr. 2005.

incollection

Wang P.,Turner G.,Simms S.,Hart D.,Papakhian M.,and Stewart A. C.,. 2005. Part 4, Cluster and Grid Computing, High Performance Computing, Paradigm and Infrastructure John Wiley & Sons.

R.U. Payli, E. Yilmaz, A. Ecer, H.U. Akay, and S. Chien,. 2005. Parallel CFD 2004 Elsevier Science.

S.Y. Chien, L.Giavelli, A. Ecer, and H.U. Akay. 2005. Parallel CFD 2004 Elsevier Science.

inproceedings

Geoffrey C. Fox, Mehmet S. Aktas, Glaip Aydin, Andra Donnellan, Harshawardhan Gadgil, Robert Granat, Shrideep Pallickara, Jay Parker, Marlon E. Pierce, Sangyoon Oh, John Rundle, Ahmet Sayar, Michael Scharber, "Buidling Sensor Filter Grids: Information Archetecture for the Data Deluge", . November 27-29, 2005.

Edward Bachta, "A Case Study in the Visualization of Supernova Simulation Data", . May 25-27, 2005.

Ahmet Uyar, Geoffrey Fox, "Investigating the Performance of Audio/Video Service Architecture I: Single Broker", . May 2005.

Ahmet Uyar, Geoffrey Fox, "Investigating the Performance of Audio/Video Service Architecture II: Broker Network", . May 2005.

Sanyoon Oh, Hasan Bulut, Ahmet Uyar, Wenjun Wu, Geoffrey Fox, "Optimized Communication using the SOAP Inforset For Mobile Multimedia Collaboration Applications - St. Louis, Missouri, USA", . May 2005.

Sangyoon Oh, Sangmi Lee Pallickara, Sunghoon Ko, Jai-Hoon Kim, Geoffrey Fox, "Cost Model and Adaptive Scheme for Publish/Subscribe Systems on Mobile Environments", , pp. pp 275-278.. May 2005.

Harshawardhan Gadgil, Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Robert Granat, "A Scripting based Architecture for Management of Streams and Services in Real-time Grid Applications", . May 2005.

Geoffrey Fox, Shrideep Pallickara, "Deploying the NaradaBrokeringSubstrate in Aiding Efficient Web & Grid Service Interactions", , pp. vol. 93, pp. 564-577,.. March 2005.

D. Gannon, J. Alameda, O. Chipara, M. Christie, V. Dukle, L. Fang, M. Farellee, G. Fox, S. Hampt, G. Kandaswamy, D. Kodeboyina, C. Moad, M. Pierce, B. Plale, A. Rossi, Y. Simmhan, A. Sarangi, Slominiski, S. Shirasuana, T. Thomas, "Building Grid Portal Applications form a Web-Service Component Architecture", . March 2005.

Balas, Edward; Viecco, Camilo, "Towards a third generation data capture architecture for Honeynets", . June 2005.

Evans, M.A., Leake, D., McMullen, D.F., Bogaerts, S., "Ethnographic Methods to Study Context: An Illustration", . July 5-8 2005.

Hongbin Liu, Shrideep Pallickara, Geoffrey Fox, "Performance of Web Services Security - Baton Rouge, Louisiana", . Feb 3-5, 2005.

Devadithya, T., Chiu, K., Huffman, K., McMullen, D.F., "The Common Instrument Middleware Architecture: Overview of Goals and Implementation", . December 5-8, 2005.

Shrideep Pallickara, Geoffrey Fox, Sangmi Lee Pallickara, "An Analysis of Reliable Delivery Specifications for Web Services", . April 4-6, 2005.

Minjun Wang, Geoffrey Fox, Marlon Pierce, "Grid-based Collaboration in Interactive Data Language Applications", , pp. Vol. I, pp. 335-341.. April 4-6, 2005.

Shrideep Pallickara, Geoffrey Fox, Beytullah Yildiz, Sangmi Lee Pallickara, Sima Patel, Damodar Yemme, "An Analysis of the Costs for Reliable Messaging in Web/Grid Service Environments", . 2005.

Shrideep Pallickara, Harshawardhan Gadgil, Geoffrey Fox, "On the Discovery of Topics in Distributed Publish/Subscribe Systems", , pp. pp 25-32.. 2005.

Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Hasan Bulut, Harshawardhan Gadgil, Sangyoon Oh, Shrideep Pallickara, Marlon E. Pierce, Ahmet Sayar, Gang Zhai, "Grids for Real Time Data Applications", , September 11-14. 2005.

Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce, "Information Services for Dynamically Assembled Semantic Grids Conference", Proceedings of First International Conference on SKG2005 Semantics, Knowledge grid, Beijing, China., Nov 27-29. 2005.

Aktas,Mehmet, Geoffrey Fox, Seong-Joon Yoo, "Data Integration Hub for a Hybrid Paper Search", None, Melbourne, Australia., pp. 170-176., Sept. 2005.

Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, Han-Ku Lee, "Collective Communications for Scalable Programming", , Nov 2-5 Springer-Verlag. 2005.

Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, Han-Ku Lee, "A Low--Level Communication Library for Java HPC - ICA3PP 2005", , Oct 2-5. 2005.

Shrideep Pallickara, Harshawardhan Gadgil, Geoffrey Fox, "On the Discovery of Brokers in Distributed Messaging Infrastructures", , Sep. 2005.

Ahmet Sayar, Marlon Pierce, Geoffrey Fox, "Message Exchange for Web Service-Based Mapping Services", . 2005.

Sang Lim, Geoffrey Fox, Ali Kaplan, Shrideep Pallickara, Marlon Pierce, "GridFTP and Parallel TCP Support in NaradaBrokering", . 2005.

Dolinsky, M., Anstey, J., Pape D., Aguilera J., Kostis H., Tsoupikova D.,, "Collaborative Virtual Environments Art Exhibition.", . 2005.

Sang Boem Lim, Bryan Carpenter, Geoffrey Fox, Han-Ku Lee, "Implementation of Collectives for Scalable Programming in Java", . 2005.

M. P. Thomas, J. Burruss, L. Cinquini, G. Fox, D. Gannon, L. Gilbert, G. von Laszewski, K. Jackson, D. Middleton, R. Moore, M. Pierce, B. Plale, A. Rajasekar, R. Regno, E. Roberts, D. Schissel, A. Seth, W. Schroeder, "Grid Portal Architectures for Scientific Applications Meeting 2005", , June 26-30. 2005.

Shrideep Pallickara, Harshawardhan Gadgil, Geoffrey Fox, "On the Discovery of Topics in Distributed Publish/Subscribe Systems", , May. 2005.

Jungkee Kim, Geoffrey Fox, "Scalable Hybrid Search on Distributed Databases", , pp. Vol. 3516 of Lecture Notes in Computer Science (LNCS)., May. 2005.

Sangyoon Oh, Sangmi Lee Pallickara, Sunghoon Ko, Jai-Hoon Kim, Geoffrey Fox, "Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments", , pp. pp 576-584.. 2005.

Maguitman, A., F. Menczer, H. Roinestad, A. Vespignani, "Algorithmic Detection of Semantic Similarity", . 2005.

Eric Wernert, Mike Boyles, John N. Huffman, Jeff Rogers, John C. Huffman, and Craig Stewart, "The John-e-Box: Fostering Innovation, Inclusion and Collaboration through Accessible Advanced Visualization", , October. 2005.

McMullen, D.F., Devadithya, T., Chiu, K, "Integrating Instruments and Sensors into the Grid with CIMA Web Services", Proceedings of the Third ApPAC Conference on Advanced Computing Grid Applications and e-Research (APAC05), Gold Coast, Australia., September 25-30,. 2005.

McMullen, D.F., Huffman, K., "Connecting Users to Instruments and Sensors: Portals as Multi-user GUI's for Instrument and Sensor Facilities", Proceedings of GCE 2005: Workshop on Grid Computing Portals held in conjuction with SC05, Seattle, WA., November 18,. 2005.

Leake, D., Bogaerts, S., Evans, M., McMullen, D.F., "Contextual Support for Remote Cooporerative Troubleshooting: Lessons From a Naturalistic Study", Proceedings of the International Workshop on Cooperative Systems and Context (CEUR), (location)., October. 2005.

Eric A. Wernert et. al., "PViN - A Scalable and Flexible System for Visualizing Pedigree Databases", , February. 2005.

Jagannathan Lakshmipathy et. al., "A Novel Approach to Extract Triangle Strips for Iso-Surfaces in Volumes", , pp. 239-245.. 2005.

M. Meiss, F. Menczer, A. Vespignani, "On the Lack of Typical Behavior in the Global Web Traffic Network", . 2005.

Wernert, E. A., M. J. Boyles, J. N. Huffman, J. L. Rogers, J. C. Huffman, C. A. Stewart, "The John-e-Box: Fostering Innovation, Inclusion, and Collaboration through Accessible Advanced Visualization", Tapia 2005, Albuquerque, NM., October. 2005.

Crabtree, A,Evans, M,Fraser, M.,Tolmie, P.,McMullen, D., "Situating Ubiquitous Computing in Wveryday Life: Bridging the Social and Technical Divide", UbiComp 2005 International Conference, Tokyo, Japan., September 11-15. 2005.

Gadgil, Harshawardhan,Fox, Geoffrey,Pierce, Marlon,Pallickara, Shrideep, "HP Search: Service Management & Administration Tool - Abstract", Meeting on Virtual Lab for Earth and Planetary Models (VLAB), Minnesota., July 21-23. 2005.

Graham, Richard;Woodall, Timothy;Squyres, Jeffrey, "Open MPI: A Flexible High Performance MPI", 6th Annual International Conference on Parallel Processing and Applied Mathematics, Poznan, Poland., September. 2005.

Huffman, J.;McMullen, Donald;Huffman, Kianosh, "Remote Monitoring and Access to Instruments and Data: The CIMA Crystallography portal", 2006 Annual Meeting of the American Crystallographic Association, Honolulu, HI., July 22-27. 2005.

J?rvi, Jaakko;Wilcock, Jeremiah;Lumsdaine, Andrew, "Associated Types and Constraint Propagation for Mainstream Object-oriented Generics", 20th annual ACM SIGPLAN Conference on Object-oriented Programming Systems Languages and applications, New York, NY., January 19. 2005.

Rasmussen, Craig;Squyres, Jeffrey, "A Case for New MPI Fortran Bindings", 12th European PVM/MPI Users' Group meeting, Sorrento, Italy., September. 2005.

Siek, Jeremy;Lumsdaine, Andrew, "Essential Language Support for Generic Progamming", ACM SIGPLAN 2005 Conference on Programming Language Design, New York, NY., june. 2005.

misc

Geoffrey Fox. 2005. "Community Grids Laboratory Summary"

Harshawardhan Gadgil, Geoffrey Fox, Marlon Pierce, Shrideep Pallickara. 2005. "HPSearch: Service Management & Administration Tool" Abstract for VLAB Meeting Minnesota.

Stewart, C.A.. 2005. "Scientific Data Management" presented at PittCon 2005, Orlando, FL. Tutorial.

Stewart, C.A., R. Repasky, A. Arenson. 2005. "Open source tools for computational biology" presented at SC2004, Pittsburgh, PA. Tutorial.

proceedings

Wernert, E.A., and G. Bertoline 2005. "Proceedings of the 2005 I-light Symposium" Indiana University Purdue University Indianapolis. Indianapolis, IN.

2005. "Analysis of the Component Architecture Overhead in Open MPI" Barrett, B.,Squyres, J.M.,Lumsdaine, A.,Lumsdaine, A.,Lumsdaine, A.. Sorrento, Italy.

2005. "Analysis of the Component Architecture Overhead in Open MPI" Barrett, B.,Squyres, J.M.,Lumsdaine, A.,Lumsdaine, A.,Lumsdaine, A.. Sorrento, Italy.

Castain, R.H,Woodall, T.S,Daniel, D.J,Squyres, J.M,Barrett, B,Fagg, G.E. 2005. "The Open Run-Time Environment (OpenRTE): A Transparent Multi-Cluster Environment for High-Performance Computing" Sorrento, Italy.

Seminar/Talk

Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Hasan Bulut, Shrideep Pallickara, Marlon Pierce, Ahmet Sayar, Wenjun Wu, Gang Zhai. 2005. "Real Time Streaming Data Grid Applications, TIWDC 2005" Invited talk. Seminar/Talk.

Geoffrey Fox, Galip Aydin, Harshawardhan Gadgil, Shrideep Pallickara, Marlon Pierce, Wenjun Wu. 2005. "Management of Real-Time Streaming Data Grid Services (GCC2005), Beijing China" Invited talk at Fourth International Conference on Grid and Cooperative Computing. Seminar/Talk.

Geoffrey C. Fox, Mehmet S. Aktas, Galip Aydin, Harshawardhan Gadgil, Shrideep Pallickara, Marlon E. Pierce, Ahmet Sayar. 2005. "Algorithms and the Grid -" August 2005 talk at ALGORITMY 2005 Conference on Scientific Computing Vysoke Tatry, Podbanske. Seminar/Talk.

R. Heiland, D. Milsho, K. Browning. 2005. "Using Squeak to Graphically Model Symmetries in Nature" Poster Presentation, ITAP Teaching and Learning with Technology Conference (Purdue). Seminar/Talk.

techreport

Gregor, Douglas,Siek, Jeremy. May, 2005. "Explicit model definitions are necessary"Num. N/A. N/A.

Ahmet Sayar, Marlon Pierce, Geoffrey Fox. Mar 2005. "OGC Compatible Geographical Informaiton Services - Indiana Computer Science Report TR610" Indiana University.

Ahmet Sayar, Mehmet Aktas, Galip Aydin, Marlon Pierce, Geoffrey Fox. June 2005. "Developing a Web Service-Compatible Map Server for Geophysical Applications" Indiana University.

Ahmet Uyar, Wenjun Wu, Hasan Bulut, Geoffrey Fox. Jan 2005. "Service-Oriented Architecture for Building a Scalable Videoconferencing System" Indiana University.

Shrideep Pallickara, Hasan Bulut, Pete Burnap, Geoffrey Fox, Ahmet Uyar, David Walker. Feb 2005. "Support for High Performance Real-time Collaboration within the NaradaBrokering Substrate" Indiana University.

Gregor, Douglas,Siek, Jeremy. August, 2005. "Implementing Concepts"Num. N/A. N/A.

Gregor, Douglas,Siek, Jeremy,Willcock, Lumsdaine, Andrew,Jeremiah,J?rvi, Jaakko,Gardia, Ronald. August, 2005. "Concepts for C++Ox (Revision 1)"Num. N/A. N/A.

Gregor, Douglas,Siek, Jeremy,Willcock, Lumsdaine, Andrew,Jeremiah,J?rvi, Jaakko,Gardia, Ronald. August, 2005. "Concepts for C++Ox (Revision 1)"Num. N/A. N/A.

Gregor, Douglas;Lumsdaine, Andrew;Siek, Jeremy;Willcock, Jeremiah;J?rvi, Jaakko;Gardia, Ronald;. August 2005. "Concepts for C++Ox: Revision 1"Num. n/a. Information Technology Subcommittee SC22 Programming Language C++.

Shrideep Pallickara, Geoffrey Fox, Hasan Bulut. April 2005. "Fault Tolerant Reliable Delivery of Events in Distributed Middleware Systems" Indiana University.

Hongbin Liu, Geoffrey Fox, Marlon Pierce, Shrideep Pallickara. April 2005. "A Multi-party Implementation of WS-SecureConversation" Indiana University.

Ahmet Fatih Mustacoglu, Geoffrey Fox. 2005. "Internet Calendaring and Scheduling Core Object Specifiication (iCalendar) Compatible Collaborative Calendar-Server (CCS) Web services" Indiana University.

Minjun Wang. 2005. "A Description of the Implementation of Collaborative ReviewPlus" Indiana University.

Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil, Geoffrey Fox, Yan Yan, Yi Huang. 2005. "A Framework for Secure End-to-End Delivery of Messages in Publish/Subscribe Systems" Indiana University.

Sangyoon Oh, Geoffrey C. Fox. 2005. "HHFR: A new architecture for Mobile Web Services: Principles and Implementations" Indiana University.

Mehmet S. Aktas, Geoffrey C. Fox, Marlon Pierce. 2005. "An Architecture for Supporting Information in Dynamically Assembled Semantic Grids" Indiana University.

Yu Ma, Randall Bramley, and Sun Kim. 2005. "A Data Management Architecture for Computational Biology."Num. TRxxx,. Department of Computer Science, Indiana University.

Felipe Bertrand, Randall Bramley, Kostadin B. Damevski, James A. Kohl, David E. Bernholdt, Jay W. Larson, and Alan Sussman. 2005. "Data Redistribution and Remote Method Invocation in Parallel Component Architectures"Num. TR604. Department of Computer Science, Indiana University..

Galip Aydin, Mehmet S. Aktas, Geoffrey C. Fox, Harshawardhan Gadgil, Marlon Pierce, Ahmet Sayar. 2005. "SERVOGrid Complexity Computational Environments (CCE) Integrated Performance Analysis"Num. N/A. Indiana University.

Shrideep Pallickara, Geoffrey Fox, Beytullah Tildiz, Sangmi Lee Pallickara, Sima Patel, Damodar Yemme. 2005. "An Analysis of the Costs of Reliable Messaging in Web/Grid Service Environments" Indiana University.

Mehmet S. Aktas, Galip Aydin, Geoffrey C. Fox, Harshawardhan Gadgil, Marlon Pierce, Ahmet Sayar. 2005. "Information Services for Grid/Web Service Oriented Architecture (SOA) Based Geospatial Applications" Indiana University.

Shrideep Pallickara, Hasan Bulut, Pete Burnap, Geoffrey Fox, Ahmet Uyar, David Walker. 2005. "Support for High Performance Real-time Collaboration within the NaradaBrokering Substrate" Indiana University.

Minjun Wang, Geoffrey Fox, Marlon Pierce. 2005. "General Collaboration Structures for Interactive Data Language Applications" Indiana University.

Danko Antolovic, Alex Leykin, Steven D. Johnson. 2005. "Vanishing Point: a Visual Road-Detection Program for a DARPA Grand Challenge Vehicle"Num. N/A. Indiana University Computer Science Department. Technical Report TR622,.

Aktas, Mehmet,Aydin, Galip,Fox, Geoffrey C.Gadgil, Harshawardhan,Gadgil, Harshawardhan,Sayar, Ahmet. 2005. "Information Services for Grid/Web Service Oriented Architecture (SOA) Based Geospatial Applications,"Num. N/A. N/A.

Barrett, Brian W,Squyres, Jeffrey M.,Lumsdaine, Andrew. 2005. "Implementation of Open MPI on Red Storm"Num. N/A. N/A. Los Alamos, NM.

Friedlander, Amy,Mankin, Allison,Mankin, Allison. 2005. "Securing the Infrastructure"Num. N/A. N/A.

Aktas, Mehmet,Fox, Geoffrey,Pierce, Marlon. 2005. "An Architecture for Supporting Information in Dynamically Addembled Semantic Grids"Num. n/a. Indiana University Community Grids Lab.

Sayar, Ahmet;Pierce, Marlon;Fox, Geoffrey. 2005. "OGC Compatible Geographical Information Services"Num. TR610. Indiana University Department of Computer Science.

unpublished

Wenjun Wu, Geoffrey Fox, Hasan Bulut, Ahmet Uyar, Tao Huang. . "Service Oriented Architecture for VoIP Conferencing".

Geoffrey Fox, Shrideep Pallickara, Marlon Pierce, Harshawardhan Gadgil,. . "Building Messaging Substrates for Web and Grid Applications".

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