Indiana University

PTI Bibliography

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2013
Marques-Pita, M., and L. M. Rocha, "Canalization and Control in Automata Networks: Body Segmentation in Drosophila Melanogaster" PLoS ONE, vol. 8, no. 3, Mar 2013.
Kolchinsky, A., A. Lourenco, L. Li, and L. M. Rocha, Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions , Big Island, Hawaii, Jan 2013.
2012
Simas, T., and L. M. Rocha, "Semi-metric networks for recommender systems" IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology, Macau, China, Dec 2012.
Goni, J., A. Kolchinsky, M. Van den Heuvel, A. Griffa, L. M. Rocha, and O. Sporns, Information, Space and Structure in the Human Brain Resting State , La Herradura, Tropical Coast of Granada, Spain, Sep 2012.
2011
Lourenço, A., M. Conover, A. Wong, A. Nematzadeh, F. Pan, H. Shatkay, and L. M. Rocha, "A Linear Classifier Based on Entity Recognition Tools and a Statistical Approach to Method Extraction in the Protein-Protein Interaction Literature" BMC Bioinformatics, vol. 12, no. (Sup 8), pp. S12, Oct 03 2011.
Karnik, S., A. Subhadarshini, Z. Wang, L. M. Rocha, and L. Li, "Extraction of drug-drug interactions using all paths graph kernel" First Challenge Task: Drug-Drug Interaction Extraction, Huelva, Spain, pp. 83-88, Sep 07 2011.
Kolchinsky, A., and L. M. Rocha, "Prediction and modularity in dynamical systems" European Conference on Artificial Life (ECAL), Paris, France, MIT Press, pp. 423-430, Aug 08 2011. Abstract  Download: 0262297140chap65.pdf (420.99 KB)
Kolchinsky, A., and L. M. Rocha, "Prediction and modularity in complex dynamical systems" 8th International Conference on Complex Systems, Quincy, MA, Jun 26 2011.
Marques-Pita, M., and L. M. Rocha, "Schema Redescription in Cellular Automata: Revisiting Emergence in Complex Systems" the IEEE Symposium Series on Computational Intelligence (SSCI 2011), Paris, France, IEEE, pp. 233-240, Apr 11-15 2011. Abstract
Abi-Haidar, A., and L. M. Rocha, "Collective classification of textual documents by guided self-organization in T-Cell cross-regulation dynamics" Evolutionary Intelligence, vol. 4, no. 2, pp. 69-80, Feb 04 2011. Abstract
2010
Lourenço, A., M. Conover, A. Wong, F. Pan, A. Abi-Haidar, A. Nematzadeh, H. Shatkay, and L. M. Rocha, "Testing Extensive Use of NER tools in Article Classification and a Statistical Approach for Method Interaction Extraction in the Protein-Protein Interaction Literature" BioCreative III Workshop 2010, Bethesda, MD, Sep 2010.
Abi-Haidar, A., and L. M. Rocha, "Collective Classification of Biomedical Articles using T-Cell Cross-regulation" 12th International Conference on the Synthesis and Simulation of Living Systems (Alife XII), Odense, Denmark, MIT Press, pp. 706, Aug 2010. Abstract
Abi-Haidar, A., and L. M. Rocha, "Biomedical Article Classification using an Agent-Based Model of T-Cell Cross-Regulation" 9th International Conference on Artificial Immune Systems (ICARIS 2010), vol. 6209, Edinburg, U.K., Springer-Verlag, pp. 237-249, Jul 2010. Abstract
Kolchinsky, A., A. Abi-Haidar, J. Kaur, A. A. Hamed, and L. M. Rocha, "Classification of Protein-protein Interaction Full-text Documents Using Text and Citation Network Features" IEEE/ACM Transactions On Computational Biology And Bioinformatics , vol. PP, no. 99, pp. 1-1, May 2010. Abstract
Lourenço, A., R. C. Carreira, D. Glez-Peña, J. R. Méndez, S. A. Carneiro, L. M. Rocha, F. Díaz, E. C. Ferreira, I. P. Rocha, F. Fdez-Riverola, et al., "BioDR: Semantic indexing networks for biomedical document retrieval" Expert Systems with Applications, vol. 37, no. 4, pp. 3444-3453, Apr 2010. Abstract