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/**********************************************************************
Copyright 2003, The Trustees of Indiana University. All right reserved.
Original author: Huian Li.
Last modified by Huian Li, June 29, 2005
Filename: README
**********************************************************************/
This code simply reads a sequence file, and then lists all locations
and frequency of each word of a given length.
Input: a word length, a sequence filename
The sequence file should either be in FASTA format or
just sequences (consisting of A, C, G, or T)
Output: enumerate each word occurred in the sequence, as well as all
locations in the sequence and its total occurrence.
Compiling GeneIndex:
====================
* Change to Makefile may be required. The default Makefile works on IBM
SP machine with AIX operating system.
For serial code, choose a C compiler availabe on your machine;
for parallel code, choose a parallel C compiler that supports MPI.
Running GeneIndex:
==================
* Run "geneindex -h" to see help information.
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